Publications

ZORA Publication List

Publications

2024

• 2024

  • Journal Article

    • Simpson, Eleanor H; Akam, Thomas; Patriarchi, Tommaso; Blanco-Pozo, Marta; Burgeno, Lauren M; Mohebi, Ali; Cragg, Stephanie J; Walton, Mark E (2024). Lights, fiber, action! A primer on in vivo fiber photometry. Neuron, 112(5):718-739.
    • Stuber, Annina; Cavaccini, Anna; Manole, Andreea; Burdina, Anna; Massoud, Yassine; Patriarchi, Tommaso; Karayannis, Theofanis; Nakatsuka, Nako (2024). Interfacing Aptamer-Modified Nanopipettes with Neuronal Media and Ex Vivo Brain Tissue. ACS Measurement Science Au, 4(1):92-103.
2023

• 2023

  • Journal Article

    • Salinas, Armando G; Lee, Jeong Oen; Augustin, Shana M; Zhang, Shiliang; Patriarchi, Tommaso; Tian, Lin; Morales, Marisela; Mateo, Yolanda; Lovinger, David M (2023). Distinct sub-second dopamine signaling in dorsolateral striatum measured by a genetically-encoded fluorescent sensor. Nature Communications, 14(1):5915.
    • Kagiampaki, Zacharoula; Rohner, Valentin; Kiss, Cedric; Curreli, Sebastiano; Dieter, Alexander; Wilhelm, Maria; Harada, Masaya; Duss, Sian N; Dernic, Jan; Bhat, Musadiq A; Zhou, Xuehan; Ravotto, Luca; Ziebarth, Tim; Wasielewski, Laura Moreno; Sönmez, Latife; Benke, Dietmar; Weber, Bruno; Bohacek, Johannes; Reiner, Andreas; Wiegert, J Simon; Fellin, Tommaso; Patriarchi, Tommaso (2023). Sensitive multicolor indicators for monitoring norepinephrine in vivo. Nature Methods, 20(9):1426-1436.
    • Harada, Masaya; Capdevila, Laia Serratosa; Wilhelm, Maria; Burdakov, Denis; Patriarchi, Tommaso (2023). Stimulation of VTA dopamine inputs to LH upregulates orexin neuronal activity in a DRD2-dependent manner. eLife, (20):Epub ahead of print.
    • Duffet, Loïc; Williams, Elyse T; Gresch, Andrea; Chen, Simin; Bhat, Musadiq A; Benke, Dietmar; Hartrampf, Nina; Patriarchi, Tommaso (2023). Optical tools for visualizing and controlling human GLP-1 receptor activation with high spatiotemporal resolution. eLife, 12:RP86628.
2022

• 2022

  • Journal Article

    • Duffet, Loic; Tatarskiy, Petr V; Harada, Masaya; Williams, Elyse T; Hartrampf, Nina; Patriarchi, Tommaso (2022). A photocaged orexin-B for spatiotemporally precise control of orexin signaling. Cell Chemical Biology, 29(12):1729-1738.e8.
    • Patriarchi, Tommaso (2022). New Technologies to Investigate Neuropeptides at Scale. ACS Chemical Neuroscience, 13(16):2353-2355.
    • Klein Herenbrink, Carmen; Støier, Jonatan Fullerton; Reith, William Dalseg; Dagra, Abeer; Gregorek, Miguel Alejandro Cuadrado; Cola, Reto B; Patriarchi, Tommaso; Li, Yulong; Tian, Lin; Gether, Ulrik; Herborg, Freja (2022). Multimodal detection of dopamine by sniffer cells expressing genetically encoded fluorescent sensors. Communications Biology, 5:578.
    • Patriarchi, Tommaso; Beyeler, Anna (2022). State of the art imaging of neurotransmission in animal models. Journal of Neuroscience Methods, 376:109623.
    • Duffet, Loïc; Kosar, Seher; Panniello, Mariangela; Viberti, Bianca; Bracey, Edward; Zych, Anna D; Radoux-Mergault, Arthur; Zhou, Xuehan; Dernic, Jan; Ravotto, Luca; Tsai, Yuan-Chen; Figueiredo, Marta; Tyagarajan, Shiva K; Weber, Bruno; Stoeber, Miriam; Gogolla, Nadine; Schmidt, Markus H; Adamantidis, Antoine R; Fellin, Tommaso; Burdakov, Denis; Patriarchi, Tommaso (2022). Author Correction: A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods, 19(4):505.
    • Duffet, Loïc; Kosar, Seher; Panniello, Mariangela; Viberti, Bianca; Bracey, Edward; Zych, Anna D; Radoux-Mergault, Arthur; Zhou, Xuehan; Dernic, Jan; Ravotto, Luca; Tsai, Yuan-Chen; Figueiredo, Marta; Tyagarajan, Shiva K; Weber, Bruno; Stoeber, Miriam; Gogolla, Nadine; Schmidt, Markus H; Adamantidis, Antoine R; Fellin, Tommaso; Burdakov, Denis; Patriarchi, Tommaso (2022). A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods, 19(2):231-241.

  • Working Paper

    • Salinas, Armando G; Lee, Jeong O; Augustin, Shana M; Zhang, Shiliang; Patriarchi, Tommaso; Tian, Lin; Morales, Marisela; Mateo, Yolanda; Lovinger, David M (2022). Sub-second striatal dopamine dynamics assessed by simultaneous fast-scan cyclic voltammetry and fluorescence biosensor. bioRxiv 475513, Cold Spring Harbor Laboratory.
2021

• 2021

  • Journal Article

    • Labouesse, Marie A; Patriarchi, Tommaso (2021). A versatile GPCR toolkit to track in vivo neuromodulation: not a one-size-fits-all sensor. Neuropsychopharmacology, 46(12):2043-2047.
    • Copits, Bryan A; Gowrishankar, Raaj; O’Neill, Patrick R; Li, Jun-Nan; Girven, Kasey S; Yoo, Judy J; Meshik, Xenia; Parker, Kyle E; Spangler, Skylar M; Elerding, Abigail J; Brown, Bobbie J; Shirley, Sofia E; Ma, Kelly K L; Vasquez, Alexis M; Stander, M Christine; Kalyanaraman, Vani; Vogt, Sherri K; Samineni, Vijay K; Patriarchi, Tommaso; Tian, Lin; Gautam, N; Sunahara, Roger K; Gereau, Robert W; Bruchas, Michael R (2021). A photoswitchable GPCR-based opsin for presynaptic inhibition. Neuron, 109(11):1791-1809.e11.
    • Lee, Suk Joon; Lodder, Bart; Chen, Yao; Patriarchi, Tommaso; Tian, Lin; Sabatini, Bernardo L (2021). Cell-type-specific asynchronous modulation of PKA by dopamine in learning. Nature, 590(7846):451-456.
2020

• 2020

  • Journal Article

    • Oe, Yuki; Wang, Xiaowen; Patriarchi, Tommaso; Konno, Ayumu; Ozawa, Katsuya; Yahagi, Kazuko; Hirai, Hirokazu; Tian, Lin; McHugh, Thomas J; Hirase, Hajime (2020). Distinct temporal integration of noradrenaline signaling by astrocytic second messengers during vigilance. Nature Communications, 11(1):471.
    • Patriarchi, Tommaso; Mohebi, Ali; Sun, Junqing; Marley, Aaron; Liang, Ruqiang; Dong, Chunyang; Puhger, Kyle; Mizuno, Grace Or; Davis, Carolyn M; Wiltgen, Brian; von Zastrow, Mark; Berke, Joshua D; Tian, Lin (2020). An expanded palette of dopamine sensors for multiplex imaging in vivo. Nature Methods, 17(11):1147-1155.
    • Labouesse, Marie A; Cola, Reto B; Patriarchi, Tommaso (2020). GPCR-based dopamine sensors-A detailed guide to inform sensor choice for In vivo imaging. International Journal of Molecular Sciences, 21(21):E8048.
    • Ravotto, Luca; Duffet, Loïc; Zhou, Xuehan; Weber, Bruno; Patriarchi, Tommaso (2020). A bright and colorful future for G-Protein coupled receptor sensors. Frontiers in Cellular Neuroscience, 14:67.
2019

Pagination